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Validating CESU-8 Encoded Text Utilising SIMD Instructions

Abstract

Not specified

Authors: Marco Schröder, Stefan Machmeier, Suyeon Maeng, Vincent Heuveline

Date Published: 1st Feb 2024

Publication Type: Journal

Examining quasar absorption-line analysis methods: the tension between simulations and observational assumptions key to modelling clouds

Abstract (Expand)

ABSTRACT A key assumption in quasar absorption-line studies of the circumgalactic medium (CGM) is that each absorption component maps to a spatially isolated ‘cloud’ structure that has single valued …ure that has single valued properties (e.g. density, temperature, metallicity). We aim to assess and quantify the degree of accuracy underlying this assumption. We used adaptive mesh refinement hydrodynamic cosmological simulations of two z = 1 dwarf galaxies and generated synthetic quasar absorption-line spectra of their CGM. For the Si ii λ1260 transition, and the C iv λλ1548, 1550 and O vi λλ1031, 1037 fine-structure doublets, we objectively determined which gas cells along a line of sight (LOS) contribute to detected absorption. We implemented a fast, efficient, and objective method to define individual absorption components in each absorption profile. For each absorption component, we quantified the spatial distribution of the absorbing gas. We studied a total of 1302 absorption systems containing a total of 7755 absorption components. 48  per cent of Si ii, 68  per cent of C iv, and 72  per cent of O vi absorption components arise from two or more spatially isolated ‘cloud’ structures along the LOS. Spatially isolated ‘cloud’ structures were most likely to have cloud–cloud LOS separations of 0.03Rvir (1.3 kpc), 0.11Rvir (4.8 kpc), and 0.13Rvir (5.6 kpc) for Si ii, C iv, and O vi, respectively. There can be very little overlap between multiphase gas structures giving rise to absorption components. If our results reflect the underlying reality of how absorption lines record CGM gas, they place tension on current observational analysis methods as they suggest that component-by-component absorption-line formation is more complex than is assumed and applied for chemical-ionization modelling.

Authors: Rachel Marra, Christopher W Churchill, Glenn G Kacprzak, Nikole M Nielsen, Sebastian Trujillo-Gomez, Emmy A Lewis

Date Published: 1st Feb 2024

Publication Type: Journal

Bioschemas Resource Index for Chem and Plants

Abstract (Expand)

As part of the BioHackathon Europe 2023, we here report on the progress of the hacking team preparing a resource index and knowledge graph based on the JSON-LD Bioschemas markup from several resources …al resources in the life- and natural sciences, predominantly from the fields of plant- and (bio)chemistry research. This preliminary analysis will allow us to better understand how Bioschemas markup is currently used in these two communities, so we can take actions to improve guidelines and validation on the Bioschemas markup and the data providers side. The lessons learnt will be useful for other communities as well. The ultimate goal is facilitating and improving interoperability across resources.

Authors: Daniel Arend, Alessio Del Conte, Manuel Feser, Yojana Gadiya, Alban Gaignard, Leyla Jael Castro, Ivan Mičetić, Sebastien Moretti, Steffen Neumann, Noura Rayya, Ginger Tsueng, Egon Willighagen, Ulrike Wittig

Date Published: 30th Jan 2024

Publication Type: Misc

Asteroseismic Inversions for Internal Sound Speed Profiles of Main-sequence Stars with Radiative Cores

Abstract (Expand)

The theoretical oscillation frequencies of even the best asteroseismic models of solar-like oscillators show significant differences from observed oscillation frequencies. Structure inversions seek to … use these frequency differences to infer the underlying differences in stellar structure. While used extensively to study the Sun, structure inversion results for other stars have so far been limited. Applying sound speed inversions to more stars allows us to probe stellar theory over a larger range of conditions, as well as look for overall patterns that may hint at deficits in our current understanding. To that end, we present structure inversion results for 12 main-sequence solar-type stars with masses between 1 and 1.15M⊙. Our inversions are able to infer differences in the isothermal sound speed in the innermost 30% by radius of our target stars. In half of our target stars, the structure of our best-fit model fully agrees with the observations. In the remainder, the inversions reveal significant differences between the sound speed profile of the star and that of the model. We find five stars where the sound speed in the core of our stellar models is too low and one star showing the opposite behavior. For the two stars in which our inversions reveal the most significant differences, we examine whether changing the microphysics of our models improves them and find that changes to nuclear reaction rates or core opacities can reduce, but do not fully resolve, the differences.

Authors: Lynn Buchele, Earl P. Bellinger, Saskia Hekker, Sarbani Basu, Warrick Ball, Jørgen Christensen-Dalsgaard

Date Published: 26th Jan 2024

Publication Type: Journal

Bringing Communities Together: Mapping the Investigation-Study-Assay-Model (ISA) to Fast Healthcare Interoperability Resources (FHIR).

Abstract (Expand)

Adhering to FAIR principles (findability, accessibility, interoperability, reusability) ensures sustainability and reliable exchange of data and metadata. Research communities need common infrastructures … and information models to collect, store, manage and work with data and metadata. The German initiative NFDI4Health created a metadata schema and an infrastructure integrating existing platforms based on different information models and standards. To ensure system compatibility and enhance data integration possibilities, we mapped the Investigation-Study-Assay (ISA) model to Fast Healthcare Interoperability Resources (FHIR). We present the mapping in FHIR logical models, a resulting FHIR resources' network and challenges that we encountered. Challenges mainly related to ISA's genericness, and to different structures and datatypes used in ISA and FHIR. Mapping ISA to FHIR is feasible but requires further analyses of example data and adaptations to better specify target FHIR elements, and enable possible automatized conversions from ISA to FHIR.

Authors: S. A. I. Klopfenstein, J. Sass, C. N. Vorisek, F. Jorczik, C. O. Schmidt, M. Lobe, M. Golebiewski, H. Abaza, S. Thun

Date Published: 25th Jan 2024

Publication Type: Journal

Scalable stellar evolution forecasting — Deep learning emulation versus hierarchical nearest-neighbor interpolation

Abstract

Not specified

Authors: K. Maltsev, F. R. N. Schneider, F. K. Röpke, A. I. Jordan, G. A. Qadir, W. E. Kerzendorf, K. Riedmiller, P. van der Smagt

Date Published: 19th Jan 2024

Publication Type: Journal

Accelerated chemical science with AI

Abstract (Expand)

The ASLLA Symposium focused on accelerating chemical science with AI. Discussions on data, new applications, algorithms, and education were summarized. Recommendations for researchers, educators, and …educators, and academic bodies were provided.

Authors: Seoin Back, Alán Aspuru-Guzik, Michele Ceriotti, Ganna Gryn'ova, Bartosz Grzybowski, Geun Ho Gu, Jason Hein, Kedar Hippalgaonkar, Rodrigo Hormázabal, Yousung Jung, Seonah Kim, Woo Youn Kim, Seyed Mohamad Moosavi, Juhwan Noh, Changyoung Park, Joshua Schrier, Philippe Schwaller, Koji Tsuda, Tejs Vegge, O. Anatole von Lilienfeld, Aron Walsh

Date Published: 17th Jan 2024

Publication Type: Journal

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