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1702 Publications visible to you, out of a total of 1702
From 3D hydrodynamic simulations of common-envelope interaction to gravitational-wave mergers

Abstract

Not specified

Authors: Melvin M. Moreno, Fabian R. N. Schneider, Friedrich K. Röpke, Sebastian T. Ohlmann, Rüdiger Pakmor, Philipp Podsiadlowski, Christian Sand

Date Published: 1st Nov 2022

Publication Type: Journal

A representative Performance Assessment of Maximum Likelihood based Phylogenetic Inference Tools

Abstract (Expand)

Abstract Summary The evaluation of phylogenetic inference tools is commonly conducted on simulated and empirical sequence data alignments. An open question is how representative these alignments are …tion is how representative these alignments are with respect to those, commonly analyzed by users. Based upon the RAxMLGrove database, it is now possible to simulate DNA sequences based on more than 70, 000 representative RAxML and RAxML-NG tree inferences on empirical datasets conducted on the RAxML web servers. This allows to assess the phylogenetic tree inference accuracy of various inference tools based on realistic and representative simulated DNA alignments. We simulated 20, 000 MSAs based on representative datasets (in terms of signal strength) from RAxMLGrove, and used 5, 000 datasets from the TreeBASE database, to assess the inference accuracy of FastTree2, IQ-TREE2, and RAxML-NG. We find that on quantifiably difficult-to-analyze MSAs all of the analysed tools perform poorly, such that the quicker FastTree2, can constitute a viable alternative to infer trees. We also find, that there are substantial differences between accuracy results on simulated and empirical data, despite the fact that a substantial effort was undertaken to simulate sequences under as realistic as possible settings. Contact Dimitri Höhler, dimitri.hoehler@h-its.org

Authors: Dimitri Höhler, Julia Haag, Alexey M. Kozlov, Alexandros Stamatakis

Date Published: 1st Nov 2022

Publication Type: Journal

ReStore: In-Memory REplicated STORagE for Rapid Recovery in Fault-Tolerant Algorithms

Abstract

Not specified

Authors: Lukas Hubner, Demian Hespe, Peter Sanders, Alexandros Stamatakis

Date Published: 1st Nov 2022

Publication Type: Journal

From 3D hydrodynamic simulations of common-envelope interaction to gravitational-wave mergers

Abstract

Not specified

Authors: Melvin M. Moreno, Fabian R. N. Schneider, Friedrich K. Röpke, Sebastian T. Ohlmann, Rüdiger Pakmor, Philipp Podsiadlowski, Christian Sand

Date Published: 1st Nov 2022

Publication Type: Journal

National and subnational short-term forecasting of COVID-19 in Germany and Poland during early 2021

Abstract

Not specified

Authors: Johannes Bracher, Daniel Wolffram, Jannik Deuschel, Konstantin Görgen, Jakob L. Ketterer, Alexander Ullrich, Sam Abbott, Maria V. Barbarossa, Dimitris Bertsimas, Sangeeta Bhatia, Marcin Bodych, Nikos I. Bosse, Jan Pablo Burgard, Lauren Castro, Geoffrey Fairchild, Jochen Fiedler, Jan Fuhrmann, Sebastian Funk, Anna Gambin, Krzysztof Gogolewski, Stefan Heyder, Thomas Hotz, Yuri Kheifetz, Holger Kirsten, Tyll Krueger, Ekaterina Krymova, Neele Leithäuser, Michael L. Li, Jan H. Meinke, Błażej Miasojedow, Isaac J. Michaud, Jan Mohring, Pierre Nouvellet, Jedrzej M. Nowosielski, Tomasz Ożański, Maciej Radwan, Franciszek Rakowski, Markus Scholz, Saksham Soni, Ajitesh Srivastava, Tilmann Gneiting, Melanie Schienle

Date Published: 31st Oct 2022

Publication Type: Journal

MatchTope: A tool to predict the cross reactivity of peptides complexed with Major Histocompatibility Complex I

Abstract

Not specified

Authors: Marcus Fabiano de Almeida Mendes, Marcelo de Souza Bragatte, Priscila Vianna, Martiela Vaz de Freitas, Ina Pöhner, Stefan Richter, Rebecca C. Wade, Francisco Mauro Salzano, Gustavo Fioravanti Vieira

Date Published: 28th Oct 2022

Publication Type: Journal

A simple approach for detecting HLA‐A *02 alleles in archival formalin‐fixed paraffin‐embedded tissue samples and an application example for studying cancer immunoediting

Abstract

Not specified

Authors: Johannes Witt, Saskia Haupt, Aysel Ahadova, Lena Bohaumilitzky, Vera Fuchs, Alexej Ballhausen, Moritz Jakob Przybilla, Michael Jendrusch, Toni T. Seppälä, Daniel Fürst, Thomas Walle, Elena Busch, Georg Martin Haag, Robert Hüneburg, Jacob Nattermann, Magnus von Knebel Doeberitz, Vincent Heuveline, Matthias Kloor

Date Published: 25th Oct 2022

Publication Type: Journal

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