Filter and export

Publications

What is a Publication?
130 Publications visible to you, out of a total of 130
Phylogenomic analyses data of the avian phylogenomics project

Abstract

Not specified

Authors: Erich D Jarvis, Siavash Mirarab, Andre J Aberer, Bo Li, Peter Houde, Cai Li, Simon YW Ho, Brant C Faircloth, Benoit Nabholz, Jason T Howard, others

Date Published: 2015

Publication Type: Journal

Computing the Internode Certainty and related measures from partial gene trees.

Abstract

Not specified

Authors: Kassian Kobert, Leonidas Salichos, Antonis Rokas, Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

Using RAxML to Infer Phylogenies

Abstract

Not specified

Author: Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

Are all global alignment algorithms and implementations correct?

Abstract

Not specified

Authors: Tomáš Flouri, Kassian Kobert, Torbjørn Rognes, Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

The State of Software in Evolutionary Biology

Abstract

Not specified

Authors: Diego Darriba, Tomas Flouri, Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

Two Independent and Highly Efficient Open Source TKF91 Implementations

Abstract (Expand)

In the context of a master level programming practical at the computer science department of the Karlsruhe Institute of Technology, we developed and make available two independent and highly optimized … open-source implementations for the pair-wise statistical alignment model, also known as TKF91, that was developed by Thorne, Kishino, and Felsenstein in 1991. This paper has two parts. In the educational part, we cover teaching issues regarding the setup of the course and the practical and summarize student and teacher experiences. In the scientific part, the two student teams (Team I: Nikolai, Sebastian, Daniel; Team II: Sarah, Pierre) present their solutions for implementing efficient and numerically stable implementations of the TKF91 algorithm. The two teams worked independently on implementing the same algorithm. Hence, since the implementations yield identical results -with slight numerical deviations- we are confident that the implementations are correct. We describe the optimizations applied and make them available as open-source codes in the hope that our findings and software will be useful to the community as well as for similar programming practicals at other universities.

Authors: Nikolai Baudis, Pierre Barbera, Sebastian Graf, Sarah Lutteropp, Daniel Opitz, Tomas Flouri, Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

Do Phylogenetic Tree Viewers correctly display Support Values?

Abstract

Not specified

Authors: Lucas Czech, Alexandros Stamatakis

Date Published: 2015

Publication Type: Journal

Powered by
 (v.1.14.2)
About HITS Publication SEEK | About HITS-Publication-SEEK | Funding and Programmes | Credits
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH