Publications

153 Publications visible to you, out of a total of 153

An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees

Computational Molecular Evolution

Abstract

Not specified

Authors: Andre J. Aberer, Alexandros Stamatakis, Fredrik Ronquist

Date Published: 14th Dec 2015

Publication Type: Journal

DOI: 10.1093/sysbio/syv051

Citation: Syst Biol 65(1):161-176

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

How do SNP ascertainment schemes and population demographics affect inferences about population history?

Computational Molecular Evolution

Abstract

Not specified

Authors: Emily Jane McTavish, David M Hillis

Date Published: 1st Dec 2015

Publication Type: Journal

DOI: 10.1186/s12864-015-1469-5

Citation: BMC Genomics 16(1)

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

Twisted trees and inconsistency of tree estimation when gaps are treated as missing data – The impact of model mis-specification in distance corrections

Computational Molecular Evolution

Abstract

Not specified

Authors: Emily Jane McTavish, Mike Steel, Mark T. Holder

Date Published: 1st Dec 2015

Publication Type: Journal

DOI: 10.1016/j.ympev.2015.07.027

Citation: Molecular Phylogenetics and Evolution 93:289-295

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

Computational Molecular Evolution

Abstract

Not specified

Authors: Adam D. Leaché, Barbara L. Banbury, Joseph Felsenstein, Adrián nieto-Montes de Oca, Alexandros Stamatakis

Date Published: 14th Oct 2015

Publication Type: Journal

DOI: 10.1093/sysbio/syv053

Citation: Syst Biol 64(6):1032-1047

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

Phylesystem: a git-based data store for community-curated phylogenetic estimates

Computational Molecular Evolution

Abstract

Not specified

Authors: Emily Jane McTavish, Cody E. Hinchliff, James F. Allman, Joseph W. Brown, Karen A. Cranston, Mark T. Holder, Jonathan A. Rees, Stephen A. Smith

Date Published: 24th Aug 2015

Publication Type: Journal

DOI: 10.1093/bioinformatics/btv276

Citation: Bioinformatics 31(17):2794-2800

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

Impacts of Terraces on Phylogenetic Inference

Computational Molecular Evolution

Abstract

Not specified

Authors: Michael J. Sanderson, Michelle M. McMahon, Alexandros Stamatakis, Derrick J. Zwickl, Mike Steel

Date Published: 17th Aug 2015

Publication Type: Journal

DOI: 10.1093/sysbio/syv024

Citation: Syst Biol 64(5):709-726

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

ExaML version 3: a tool for phylogenomic analyses on supercomputers

Computational Molecular Evolution

Abstract

Not specified

Authors: Alexey M. Kozlov, Andre J. Aberer, Alexandros Stamatakis

Date Published: 25th Jul 2015

Publication Type: Journal

DOI: 10.1093/bioinformatics/btv184

Citation: Bioinformatics 31(15):2577-2579

Created: 7th Sep 2019 at 07:10, Last updated: 5th Mar 2024 at 21:23

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