Publications

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1702 Publications visible to you, out of a total of 1702

Abstract (Expand)

Motivation Gene and species tree reconciliation methods can be used to root gene trees and correct uncertainties that are due to scarcity of signal in multiple sequence alignments. So far, reconciliation tools have not been integrated in standard phylogenetic software and they either lack of performance on certain functions, or usability for biologists. Results We present Treerecs, a phylogenetic software based on duplication-loss reconciliation. Treerecs is simple to install and to use, fast, versatile, with a graphic output, and can be used along with methods for phylogenetic inference on multiple alignments like PLL and Seaview. Availability Treerecs is open-source. Its source code (C++, AGPLv3) and manuals are available from https://project.inria.fr/treerecs/

Authors: Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Celine Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons

Date Published: 11th Oct 2019

Publication Type: Journal

Abstract

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Authors: Fabian R. N. Schneider, Sebastian T. Ohlmann, Philipp Podsiadlowski, Friedrich K. Röpke, Steven A. Balbus, Rüdiger Pakmor, Volker Springel

Date Published: 10th Oct 2019

Publication Type: Journal

Abstract

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Authors: F Pozo Nuñez, N Gianniotis, J Blex, T Lisow, R Chini, K L Polsterer, J-U Pott, J Esser, G Pietrzyński

Date Published: 9th Oct 2019

Publication Type: Journal

Abstract

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Authors: T. J. Galvin, M. Huynh, R. P. Norris, X. R. Wang, E. Hopkins, O. I. Wong, S. Shabala, L. Rudnick, M. J. Alger, K. L. Polsterer

Date Published: 1st Oct 2019

Publication Type: Journal

Abstract

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Authors: Darach Watson, Camilla J. Hansen, Jonatan Selsing, Andreas Koch, Daniele B. Malesani, Anja C. Andersen, Johan P. U. Fynbo, Almudena Arcones, Andreas Bauswein, Stefano Covino, Aniello Grado, Kasper E. Heintz, Leslie Hunt, Chryssa Kouveliotou, Giorgos Leloudas, Andrew J. Levan, Paolo Mazzali, Elena Pian

Date Published: 1st Oct 2019

Publication Type: Journal

Abstract

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Authors: L. Galbany, C. Ashall, P. Höflich, S. González-Gaitán, S. Taubenberger, M. Stritzinger, E. Y. Hsiao, P. Mazzali, E. Baron, S. Blondin, S. Bose, M. Bulla, J. F. Burke, C. R. Burns, R. Cartier, P. Chen, M. Della Valle, T. R. Diamond, C. P. Gutiérrez, J. Harmanen, D. Hiramatsu, T. W.-S. Holoien, G. Hosseinzadeh, D. Andrew Howell, Y. Huang, C. Inserra, T. de Jaeger, S. W. Jha, T. Kangas, M. Kromer, J. D. Lyman, K. Maguire, G. Howie Marion, D. Milisavljevic, S. J. Prentice, A. Razza, T. M. Reynolds, D. J. Sand, B. J. Shappee, R. Shekhar, S. J. Smartt, K. G. Stassun, M. Sullivan, S. Valenti, S. Villanueva, X. Wang, J. Craig Wheeler, Q. Zhai, J. Zhang

Date Published: 1st Oct 2019

Publication Type: Journal

Abstract

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Author: Erica Hopkins

Date Published: 1st Oct 2019

Publication Type: Master's Thesis

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