Publications

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135 Publications visible to you, out of a total of 135

Abstract (Expand)

The recent boom in microfluidics and combinatorial indexing strategies, combined with low sequencing costs, has empowered single-cell sequencing technology. Thousands—or even millions—of cells analyzed in a single experiment amount to a data revolution in single-cell biology and pose unique data science problems. Here, we outline eleven challenges that will be central to bringing this emerging field of single-cell data science forward. For each challenge, we highlight motivating research questions, review prior work, and formulate open problems. This compendium is for established researchers, newcomers, and students alike, highlighting interesting and rewarding problems for the coming years.

Authors: David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R. Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P.F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

Date Published: 1st Dec 2020

Publication Type: Journal

Abstract

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Authors: Sebastian G Gornik, B Gideon Bergheim, Benoit Morel, Alexandros Stamatakis, Nicholas S Foulkes, Annika Guse

Date Published: 23rd Nov 2020

Publication Type: Journal

Abstract

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Author: Paul Schade

Date Published: 1st Nov 2020

Publication Type: Master's Thesis

Abstract

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Authors: Adrian Zapletal, Dimitri Höhler, Carsten Sinz, Alexandros Stamatakis

Date Published: 13th Oct 2020

Publication Type: Journal

Abstract

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Authors: Pierre Barbera, Lucas Czech, Sarah Lutteropp, Alexandros Stamatakis

Date Published: 9th Oct 2020

Publication Type: Journal

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Author: Dimitri Höhler

Date Published: 1st Sep 2020

Publication Type: Master's Thesis

Abstract

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Authors: Marc Gottschling, Lucas Czech, Frédéric Mahé, Sina Adl, Micah Dunthorn

Date Published: 10th Aug 2020

Publication Type: Journal

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