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Web-based visualisation of the transcriptional control network of Escherichia coli.

Abstract (Expand)

Transcription is one of the basic processes of gene expression, controlled by a complex network of biochemical reactions. Despite its importance, most work on the visualisation of biochemical networks … focuses on the representation of metabolic pathways. The visualisation of the complex networks controlling transcription requires the implementation of a hierarchical approach that allows the display of the structure of each regulatory region with its transcription factors and regulated operons. This paper presents a web-based application for the visualisation of transcriptional control networks. It takes as case study the organism Escherichia coli. The definition of the visual components implemented is mainly based on those proposed by Shen-Orr et al., 2002, slightly extended to visualise complex networks.

Authors: N. Sosa, A. Kremling, E. Ratsch, I. Rojas

Date Published: 28th Oct 2004

Publication Type: Journal

LUCIFER status report, summer 2004

Abstract

Not specified

Authors: Holger Mandel, Immo Appenzeller, Walter Seifert, Harald Baumeister, Peter Bizenberger, Ralf-Juergen Dettmar, Hans Gemperlein, Bernhard Grimm, Tom M. Herbst, Reiner Hofmann, Marcus Jutte, Werner Laun, Michael Lehmitz, Sebastiano Ligori, Rainer Lenzen, Kai Polsterer, Ralf-Rainer Rohloff, Andreas Schuetze, Andreas Seltmann, Peter Weiser, Harald Weisz, Wenli Xu

Date Published: 30th Sep 2004

Publication Type: Journal

The cryogenic MOS unit for LUCIFER

Abstract

Not specified

Authors: Reiner Hofmann, Hans Gemperlein, Bernhard Grimm, Marcus Jutte, Holger Mandel, Kai Polsterer, Harald Weisz

Date Published: 30th Sep 2004

Publication Type: Journal

The development process of the LUCIFER control software

Abstract

Not specified

Authors: Marcus Juette, Kai L. Polsterer, Michael Lehmitz, Volker Knierim

Date Published: 15th Sep 2004

Publication Type: Journal

Notes on the use of ontologies in the biochemical domain.

Abstract (Expand)

In this paper we aim at presenting the main flavours and uses that are given to the term ontology in the bio-domains. The paper does not intend to be a thorough review of the existing work in the area. … It highlights the uses that are given to ontologies in the Scientific Databases and Visualisation Group at EML Research, in Heidelberg.

Authors: I. Rojas, E. Ratsch, J. Saric, U. Wittig

Date Published: 20th Apr 2004

Publication Type: Journal

Using 3D protein structures to derive 3D-QSARs

Abstract

Not specified

Authors: Rebecca C. Wade, Stefan Henrich, Ting Wang

Date Published: 2004

Publication Type: Journal

Comparative Structural and Energetic Analysis of WW Domain-Peptide Interactions

Abstract

Not specified

Authors: Karin Schleinkofer, Urs Wiedemann, Livia Otte, Ting Wang, Gerd Krause, Hartmut Oschkinat, Rebecca C. Wade

Date Published: 2004

Publication Type: Journal

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