Systems Biology in ELIXIR: modelling in the spotlight.

Abstract:

In this white paper, we describe the founding of a new ELIXIR Community - the Systems Biology Community - and its proposed future contributions to both ELIXIR and the broader community of systems biologists in Europe and worldwide. The Community believes that the infrastructure aspects of systems biology - databases, (modelling) tools and standards development, as well as training and access to cloud infrastructure - are not only appropriate components of the ELIXIR infrastructure, but will prove key components of ELIXIR's future support of advanced biological applications and personalised medicine. By way of a series of meetings, the Community identified seven key areas for its future activities, reflecting both future needs and previous and current activities within ELIXIR Platforms and Communities. These are: overcoming barriers to the wider uptake of systems biology; linking new and existing data to systems biology models; interoperability of systems biology resources; further development and embedding of systems medicine; provisioning of modelling as a service; building and coordinating capacity building and training resources; and supporting industrial embedding of systems biology. A set of objectives for the Community has been identified under four main headline areas: Standardisation and Interoperability, Technology, Capacity Building and Training, and Industrial Embedding. These are grouped into short-term (3-year), mid-term (6-year) and long-term (10-year) objectives.

SEEK ID: https://publications.h-its.org/publications/2047

PubMed ID: 36742342

Research Groups: Scientific Databases and Visualisation

Publication type: Journal

Journal: F1000Res

Citation: F1000Res. 2022 Nov 7;11:ELIXIR-1265. doi: 10.12688/f1000research.126734.2. eCollection 2022.

Date Published: 8th Feb 2023

Registered Mode: by PubMed ID

Authors: V. Martins Dos Santos, M. Anton, B. Szomolay, M. Ostaszewski, I. Arts, R. Benfeitas, V. Dominguez Del Angel, E. Dominguez-Romero, P. Ferk, D. Fey, C. Goble, M. Golebiewski, K. Gruden, K. F. Heil, H. Hermjakob, P. Kahlem, M. I. Klapa, J. Koehorst, A. Kolodkin, M. Kutmon, B. Leskosek, S. Moretti, W. Muller, M. Pagni, T. Rezen, M. Rocha, D. Rozman, D. Safranek, W. T Scott, R. S. M. Sheriff, M. Suarez Diez, K. Van Steen, H. V. Westerhoff, U. Wittig, K. Wolstencroft, A. Zupanic, C. T. Evelo, J. M. Hancock

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Created: 11th Mar 2025 at 12:40

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Systems Biology in ELIXIR: modelling in the spotlight.