I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project (http://www.sysmo-db.org) I was responsible for metadata design (SEEK), conceptual and logical modelling of experimental data (JERM), now our team continue this work as FAIRDOM project (http://fair-dom.org/).
SEEK ID: https://publications.h-its.org/people/38
Location: Germany
ORCID: Not specified
Joined: 8th Nov 2017
Expertise: systems biology, Data Management, ontology, semantic web, ont
Tools: SEEK, FAIRDOMHub, Copasi, JWS Online, RightField, Metabolomics, Proteomics, Genomics
Related items
Public web page: https://sdbv.h-its.org
Organisms: Not specified
Abstract (Expand)
Authors: Ghadeer Mobasher, Wolfgang Müller, Olga Krebs, Michael Gertz
Date Published: 2023
Publication Type: Proceedings
DOI: 10.18653/v1/2023.bionlp-1.40
Citation: Ghadeer Mobasher, Wolfgang Müller, Olga Krebs, and Michael Gertz. 2023. WeLT: Improving Biomedical Fine-tuned Pre-trained Language Models with Cost-sensitive Learning. In The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, pages 427–438, Toronto, Canada. Association for Computational Linguistics.
Abstract (Expand)
Authors: Ghadeer Mobasher, Lukrécia Mertová, Sucheta Ghosh, Olga Krebs, Bettina Heinlein, Wolfgang Müller
Date Published: 11th Nov 2021
Publication Type: Proceedings
DOI: 10.1101/2021.11.09.467905
Citation: biorxiv;2021.11.09.467905v1,[Preprint]
Abstract (Expand)
Authors: Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M Keating, Matthias König, Olga Krebs, Rahuman S Malik-Sheriff, David Nickerson, Ernst Oberortner, Herbert M Sauro, Falk Schreiber, Lucian Smith, Melanie I Stefan, Ulrike Wittig, Chris J Myers
Date Published: 24th Aug 2020
Publication Type: Journal
Citation: Journal of Integrative Bioinformatics 17(2-3),20200005
Abstract
Authors: Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole Goble
Date Published: 3rd Jan 2017
Publication Type: Journal
DOI: 10.1093/nar/gkw1032
Citation: Nucleic Acids Res 45(D1):D404-D407
Abstract
Authors: Maksim Zakhartsev, Irina Medvedeva, Yury Orlov, Ilya Akberdin, Olga Krebs, Waltraud X. Schulze
Date Published: 1st Dec 2016
Publication Type: Journal
DOI: 10.1186/s12870-016-0868-3
Citation: BMC Plant Biol 16(1)