Kinetics on the move: Workshop on Data for Computational Modeling

Motivation:

Do you work in the lab and always wonder what these bioinformaticians do with the data you generate? Would you like to use models to verify a hypothesis or test your experimental data? Then this workshop may be right for you.

The first day of the workshop focuses on data. We will celebrate the 10th anniversary of SABIO-RK with talks and practical training relating to the publication, curation, retrieval, and usage of kinetic data from SABIO-RK.The second day of the workshop focuses on the use of data in modeling. You will hear experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.

Goals:

Using SABIO-RK to access and export structured reaction kinetics data
Experience basic modeling with kinetic data
Experience how to publish your data in a standardised and reusable manner
Experience how to find existing models and how to reuse them

Prerequisites:

Experimental or theoretical background in enzyme kinetics
or basic knowledge in systems biology.
For the practical part it is recommended to bring your own laptop.

Keywords: reaction kinetics, systems biology, modeling, data standardization

Tools: SABIO-RK , COPASI, SEEK, MaSyMoS, BiVeS